PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30711.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 257aa    MW: 30197.8 Da    PI: 8.8863
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30711.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.3e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+++vk +G g+W+++ar  g++R +k+c++rw +yl
       KHN30711.1 14 KGPWTSEEDRLLIQYVKFHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 61
                     79********************************************97 PP

2Myb_DNA-binding49.31.1e-1568111247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g  T++E+ ++ ++++++G++ W+tIar ++ gRt++++k++w+++
       KHN30711.1  68 GHITPQEESIIQELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 111
                      667******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.366965IPR017930Myb domain
SuperFamilySSF466894.4E-3011108IPR009057Homeodomain-like
SMARTSM007173.4E-161363IPR001005SANT/Myb domain
PfamPF002496.2E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-241567IPR009057Homeodomain-like
CDDcd001672.52E-111661No hitNo description
PROSITE profilePS5129418.54666116IPR017930Myb domain
SMARTSM007171.7E-1466114IPR001005SANT/Myb domain
PfamPF002491.5E-1367111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2468115IPR009057Homeodomain-like
CDDcd001672.79E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGWSVIIEEE GWRKGPWTSE EDRLLIQYVK FHGEGRWNSV ARLAGLKRNG KSCRLRWVNY  60
LRPDLKKGHI TPQEESIIQE LHARWGNRWS TIARSLPGRT DNEIKNYWRT HFKKKTKTPS  120
DAAEKARIRS SRRQQFQQQQ QQLKQQQVQQ QQQQQQQFQF NLDMKGIINL LEENNHRVPS  180
ISQEAQEMAS MYPNTSEQQD YFYSMFNVND NNVSAPECLN EEILWDGLWN LDDVLCNFNA  240
ASATSKASLH NLVAPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970470.0BT097047.1 Soybean clone JCVI-FLGm-15J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536262.10.0PREDICTED: myb-related protein 305
SwissprotQ9LK954e-54MYB21_ARATH; Transcription factor MYB21
TrEMBLA0A0B2R8780.0A0A0B2R878_GLYSO; Transcription factor MYB21
STRINGGLYMA10G33450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-80myb domain protein 305
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]